Invited Reviews
1. Stickle, N, Iscove, NN, Virtanen, C, Barbara, M, Modi, C, Baratz, A, Di Berardino, T, Greenblatt, E, Brown, T, and Winegarden, N. RNA Amplification Strategies: Toward Single Cell Sensitivity IN PRESS, Scion Publishing
2. Woodgett, J, and Virtanen C. Clinical Uses of Microarrays in Cancer Research. Methods Mol Med. 2008;141:87-113.
3. Virtanen C, and Lu, Z. CPG Array Analysis: Putting the Pieces Together in Promoter and CpG Island Microarrays by Winegarden NA and Takahashi (Eds). 2006. DNA PRESS.
Peer Reviewed Publications
1. Yoo JK, Galligan CL, Virtanen C, Fish EN. Identification of a novel antigen-presenting cell population modulating antiiinfluenza type 2 immunity. J Exp Med. 2010 Jul 5; 207(8):1435-51
2. May T, Virtanen C, Sharma M, Milea A, Begley H, Rosen B, Murphy J, Brown TJ, Shaw PA. Low malignant potential tumors with micropapillary features are molecularly similar to low-grade serous carcinoma of the ovary. Gyne Onc. 2010 Jan 29 (epub).
3. Kaminsky ZA, Tang T, Wang SC, Ptak C, Oh GH, Wong AH, Feldcamp LA, Virtanen C, Halfvarson J, Tysk C, McRae AF, Visscher PM, Montgomery GW, Gottesman II, Martin NG, Petronis A. DNA methylation profiles in monozygotic and dizygotic twins. Nat Genet. 2009 Feb;41(2):240-5.
4. Virtanen C, Paris J, Takahashi M. Identification and characterization of a novel gene, dapr, involved in skeletal muscle differentiation and protein kinase B signaling. J Biol Chem. 2009 Jan 16;284(3):1636-43.
5. Virtanen C, Takahashi M. Muscling in on microarrays. Appl Physiol Nutr Metab. 2008 Feb;33(1):124-9.
6. Flanagan JM, Popendikyte V, Pozdniakovaite N, Sobolev M, Assadzadeh A, Schumacher A, Zangeneh M, Lau L, Virtanen C, Wang SC, Petronis A. Intra- and interindividual epigenetic variation in human germ cells. Am J Hum Genet. 2006 Jul;79(1):67-84.
7. Schumacher A, Kapranov P, Kaminsky Z, Flanagan J, Assadzadeh A, Yau P, Virtanen C, Winegarden N, Cheng J, Gingeras T, Petronis A. Microarray-based DNA methylation profiling: technology and applications. Nucleic Acids Res. 2006 Jan 20;34(2):528-42.
8. Inamura K, Fujiwara T, Hoshida Y, Isagawa T, Jones MH, Virtanen C, Shimane M, Satoh Y, Okumura S, Nakagawa K, Tsuchiya E, Ishikawa S, Aburatani H, Nomura H, Ishikawa Y. Two subclasses of lung squamous cell carcinoma with different gene expression profiles and prognosis identified by hierarchical clustering and non-negative matrix factorization. Oncogene. 2005 June 27.
9. *Paris J, *Virtanen C, Lu Z, Takahashi M. Identification of MEF2-regulated genes during muscle differentiation. Physiol Genomics. 2004 Dec 15;20(1):143-51.*joint first authors
10. Jones MH, Virtanen C, Honjoh D, Miyoshi T, Satoh Y, Okumura S, Nakagawa K, Nomura H, Ishikawa Y. Two prognostically significant subtypes of high-grade lung neuroendocrine tumours independent of small-cell and large-cell neuroendocrine carcinomas identified by gene expression profiles. Lancet. 2004 Mar 6;363(9411):775-81.
11. Virtanen C, Ishikawa Y, Honjoh D, Kimura M, Shimane M, Miyoshi T, Nomura H, Jones MH. Integrated classification of lung tumors and cell lines by expression profiling. Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12357-62.
12. Berges JA, Virtanen C. Expanding the capabilities of laboratory instruments using built-in microprocessors and serial interfaces: adapting an LKB Ultrospec II UV spectrophotometer for scanning and enzyme kinetic analyses. Comput Biol Med. 1993 Mar;23(2):131-41.
13. Masso M, Lu Z, Vaisman II. Computational mutagenesis studies of protein structure-function correlations. Proteins. 2006 Jul 1;64(1):234-45.
14. Wang Y, Li W, Zhang T, Ding C, Lu Z, Long N, Rose JP, Wang BC, Lin D. Reconstruction of ancient genome and gene order from complete microbial genome sequences. J Theor Biol. 2006 Apr 21;239(4):494-8. Epub 2005 Sep 26.